The second step in applying payments to Customer invoices is to use the Apply Payments function. A payment that reduces the amount remaining to be paid on a specific debit item, instead of merely reducing the total amount owed on the account.
Pre-Requisites
Step-by-step guide
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Access the Receivables module
Click Apply Payments
Use Filter criteria to find payment
Select a Payment from the Payment List for Company grid
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Click OK
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Select the Invoice you wish to apply the payment to
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using the up and down arrow key
Enter in
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an Apply Amount
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Press Enter/ Return on your keyboard.
The Enter / Return key commits the
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applied payment amount to the selected invoice
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Select Save 
If you have additional payments to apply for other deposits, click Yes when asked to apply more.
Otherwise, click No.
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